PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20999_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-PHD
Protein Properties Length: 507aa    MW: 57395.3 Da    PI: 5.9266
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20999_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.7e-102883271453
                     HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      L ++F++n  ps+  +e L+k+lgL+ ++V  WF+N R+
  Neem_20999_f_6 288 KLRQVFAENELPSRVVKENLSKELGLEAEKVNKWFKNARY 327
                     6999**********************************97 PP
2PHD35.52.3e-12661151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD  1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
                    +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C++k
  Neem_20999_f_6  6 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWFCRFCECK 61
                    588898854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.3E-11361IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.99E-13364IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS5001610.077461IPR019787Zinc finger, PHD-finger
PfamPF006288.8E-10661IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-7659IPR001965Zinc finger, PHD-type
CDDcd155048.57E-31758No hitNo description
PROSITE patternPS013590758IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003895.1E-4274336IPR001356Homeobox domain
SuperFamilySSF466895.56E-8287333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-9288326IPR009057Homeodomain-like
PfamPF000462.7E-7288327IPR001356Homeobox domain
PROSITE profilePS5007110.867289332IPR001356Homeobox domain
CDDcd000861.01E-6289327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVEKIICAKC KLREAFPDND IVLCDGTCNC AFHQKCLDPP LDTESIPPGD QGWFCRFCEC  60
KMEIIEAMNA HIGTSFSVSS NWQDIFKEEA AFPDGGSALI NQEEDWPSDD SEDDDYNPER  120
RENSCSISGA ETDDDASSST SLSWSSDDGA LAEIQRWEIE GNGYKNFSVD SSLGSDETSD  180
GEIICRRRQR STVDYKKLYY EMFGKDASAY EQVSEDEDWG PAKRRRREKE SDAVNTLMTL  240
YGSEEKCSNV KTSEEKKKFP SDTRIRRPFF RIPPNAVEVV CNLILQAKLR QVFAENELPS  300
RVVKENLSKE LGLEAEKVNK WFKNARYIAL KTRKVERAKQ IHNSPRISKE SRLETEKKTT  360
AEVVALKDDA LKETLTRTPK SSKNIHQQKD SKSLSESLKK NQHQRASVGS PVNASNQASI  420
ELSDDMSLKK LLIAKSKKGK KANFIAQDGS QAAEAEMERL CRATGRLENL KQKLSRLKSE  480
NARKYNKNQL NDESVIYVPV AELREKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RRRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474260.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_006474261.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_024048235.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-109PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4U0X90.0V4U0X9_9ROSI; Uncharacterized protein
STRINGXP_006474260.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-102pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]