PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21030_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 198aa    MW: 22223.8 Da    PI: 5.3257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21030_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-106093135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     rg W +eEd++l+++v+ +G g+W++++r+   +R
   Neem_21030_a_1 60 RGLWKPEEDLILKNYVETHGEGNWAAVSRKSE-KR 93
                     788**************************998.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.75655110IPR017930Myb domain
SuperFamilySSF466897.48E-85897IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-105895IPR009057Homeodomain-like
SMARTSM007170.003159108IPR001005SANT/Myb domain
PfamPF002491.3E-76091IPR001005SANT/Myb domain
CDDcd001677.10E-76398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MCGSIMNYIQ DDSNILMQKL ETERYPQGLH TQYPSVISRK AKVKQINRAP HVTPLSTHKR  60
GLWKPEEDLI LKNYVETHGE GNWAAVSRKS EKRKAIDLGS SQNNGNSSNK KLPRLCDSQS  120
LPICSASTRN TLQGLDGDNK EEKNLANCVW ADDSGGSSFY YDDIESGLIP PNNATFVFDD  180
EPFIAYLDSF VVFEAFEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.14e-14myb domain protein 82