PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21257_a_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 137aa MW: 15450.5 Da PI: 9.6534

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21257_a_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.6	7.5e-43	52	128	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+ad+s+ak+yhrrhkvCe+h+ka+vv v+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk + Neem_21257_a_2 52 TCQVENCTADFSDAKKYHRRHKVCEFHAKAAVVRVAGLQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKGA 128 6*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	7.3E-57	1	137	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	2.6E-34	46	114	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.188	50	127	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-39	51	130	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-33	53	126	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDTSKAEGKR SLKEVVEDXX XXXXXDVVGF GDDDKKKKGK RVSSGAGGSS ITCQVENCTA 60 DFSDAKKYHR RHKVCEFHAK AAVVRVAGLQ QRFCQQCSRF HELSEFDDTK RSCRRRLAGH 120 NERRRKGAAE YHGEGLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-37	43	126	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978774.1	8e-60	PREDICTED: squamosa promoter-binding-like protein 3 isoform X2
Swissprot	Q38741	9e-49	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A1R3H4E4	2e-60	A0A1R3H4E4_9ROSI; Squamosa promoter-binding-like protein
STRING	EOY28200	3e-59	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-43	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]