PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21512_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 201aa    MW: 23027.9 Da    PI: 11.1023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21512_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1385129555
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     G+r+++ +grW+ e+++      +  r +lg+++taeeA + +++a  kl+g
  Neem_21512_f_1  85 GIRQRP-WGRWATEVKH------SgVRLWLGTYDTAEEAVRVYDNATIKLRG 129
                     9*****.*******888......44*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5282137IPR001471AP2/ERF domain
SMARTSM003802.5E-2482143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2282138IPR001471AP2/ERF domain
PRINTSPR003672.3E-88394IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1783139IPR016177DNA-binding domain
PfamPF008472.5E-885129IPR001471AP2/ERF domain
CDDcd000186.00E-2385139No hitNo description
PRINTSPR003672.3E-8103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNNSGVDTVR RVIRIPTTDH NTTDSSSNKD RQFSHRQNPW HHYVNETYIK LTPNKNSNTI  60
VVANNKKRIS TNASVCPRPI KEFCGIRQRP WGRWATEVKH SGVRLWLGTY DTAEEAVRVY  120
DNATIKLRGP NTLTNFSTSA LQKVKRKRAR PRNLNKSIVQ GNESNNFSTS TFVLNFRTHS  180
NTETEKEKTL MKSADKPTTI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-15831361571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731442.11e-43PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_017636364.16e-44PREDICTED: ethylene-responsive transcription factor CRF4 isoform X2
TrEMBLA0A1U8MX832e-42A0A1U8MX83_GOSHI; ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2P5VWK02e-42A0A2P5VWK0_GOSBA; Uncharacterized protein
STRINGGorai.008G271200.11e-42(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-27cytokinin response factor 4