PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21514_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 200aa    MW: 23177.2 Da    PI: 7.6001
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21514_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.6e-081461792154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Neem_21514_f_1 146 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 179
                     469*****************************87 PP
2ELK23.99.8e-09100121122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L++ Y+++++++++E++
  Neem_21514_f_1 100 ELKHELKQCYKEKIVDIREEIL 121
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.6E-13343IPR005541KNOX2
PfamPF037918.9E-13442IPR005541KNOX2
SMARTSM011880.0066100121IPR005539ELK domain
PROSITE profilePS512139.394100120IPR005539ELK domain
PfamPF037894.2E-5100121IPR005539ELK domain
PROSITE profilePS5007111.726120183IPR001356Homeobox domain
SuperFamilySSF466891.33E-16122186IPR009057Homeodomain-like
SMARTSM003894.7E-11122187IPR001356Homeobox domain
CDDcd000863.53E-11123184No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25127184IPR009057Homeodomain-like
PfamPF059203.9E-18140179IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT GATMSDDDED  60
QVDSDANLFD GSLDGPDSMG FGPLIPTESE RSLMERVRQE LKHELKQCYK EKIVDIREEI  120
LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN  180
WHSNPSTSTV LKSKRKRYFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13123187872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176196RKRNWHSNPSTSTVLKSKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888763e-59FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276163.11e-141homeobox protein knotted-1-like 3 isoform X1
RefseqXP_021276166.11e-141homeobox protein knotted-1-like 3 isoform X3
SwissprotP480001e-130KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5DDC51e-142A0A2P5DDC5_PARAD; Knotted-like homeobox transcription factor
STRINGVIT_04s0008g06130.t011e-137(Vitis vinifera)
STRINGXP_004290929.11e-137(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-126KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]