PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21539_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 212aa    MW: 24340.7 Da    PI: 9.6889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21539_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15102153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Neem_21539_f_1 102 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 153
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.203467IPR001471AP2/ERF domain
SMARTSM003800.00253273IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-74169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-74168IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-18102163IPR016177DNA-binding domain
PfamPF008471.7E-10102153IPR001471AP2/ERF domain
CDDcd000185.42E-25102163No hitNo description
Gene3DG3DSA:3.30.730.108.0E-19103162IPR001471AP2/ERF domain
SMARTSM003806.8E-34103167IPR001471AP2/ERF domain
PROSITE profilePS5103219.045103161IPR001471AP2/ERF domain
PRINTSPR003674.7E-5104115IPR001471AP2/ERF domain
PRINTSPR003674.7E-5143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGPLRSGFLR APAVLNMVQK EEDSQCACDR NKYELKKENM KTEEKAARAY DLAALKYWGP  60
TTTTNFPVSN YEKELEDMKN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI  120
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDEELL ESPKIPRNQL  180
PIARALTEAD QTTGIFLRHH LWRLLLILQP QL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388056.15e-86PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
RefseqXP_024019917.12e-86AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ33e-81AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A438FHT44e-86A0A438FHT4_VITVI; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLW9QVY51e-85W9QVY5_9ROSA; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_010094226.12e-86(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-79AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]