PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2174_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 247aa    MW: 27852.2 Da    PI: 9.614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2174_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.72.1e-44111491128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewy......fFskrdkkyatgkrknratk 79 
                    lppGfrFhP+d+elv++yL kk++++  ++   ++evd++k+ePwd+p+           +   ++++++         +rd+kyatg r+nrat+
  Neem_2174_f_6  11 LPPGFRFHPKDDELVCDYLMKKATHSCETV--LLTEVDLNKCEPWDIPAslqlilwrkvcQ---NHSQVHkltmmpKCLQRDRKYATGLRTNRATA 101
                    79********************99887544..69**************6589999986541...23333211111256789*************** PP

            NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    sgyWkatgkd+++++ kg+lvg++ktLvfy+grapkg+ktdWvmhe+r+
  Neem_2174_f_6 102 SGYWKATGKDRAIHR-KGSLVGMRKTLVFYQGRAPKGRKTDWVMHEFRI 149
                    **************9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-432153IPR003441NAC domain
PROSITE profilePS5100541.65211175IPR003441NAC domain
PfamPF023657.2E-2312149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSNISMLEAK LPPGFRFHPK DDELVCDYLM KKATHSCETV LLTEVDLNKC EPWDIPASLQ  60
LILWRKVCQN HSQVHKLTMM PKCLQRDRKY ATGLRTNRAT ASGYWKATGK DRAIHRKGSL  120
VGMRKTLVFY QGRAPKGRKT DWVMHEFRIE SASFASPKGS SLKQPNMDIS TARSTFGKIP  180
VVGSACLDLD PFSCDTKVIK AVLNQLTKIE SNDNIVKESP PSFGEPSSEL SYLSEVGMPT  240
NIMWNHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-37814912140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072721.11e-87NAC domain-containing protein 21/22
SwissprotQ84TE68e-66NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2N9HI599e-91A0A2N9HI59_FAGSY; Uncharacterized protein
STRINGcassava4.1_029889m1e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-68NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]