PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21929_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 188aa    MW: 20827.6 Da    PI: 10.1648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21929_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-10116160345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   Neem_21929_f_1 116 VWSAVQERALVQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 160
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.667112167IPR017884SANT domain
SuperFamilySSF466898.97E-10113160IPR009057Homeodomain-like
SMARTSM007176.0E-9113165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-6114159IPR009057Homeodomain-like
PfamPF002494.7E-8116159IPR001005SANT/Myb domain
CDDcd001674.74E-8117163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQKYPKGTSR RWEVISEYIG TGRSVEEILK ATKTVLLQKP DGAKAFDSFL EKRKPAVSIT  60
SPLTTREEVE GVPIHQVPQK SGVKTDVSEE SSSSVNQNPP YVAAVNGVSS SSDQDVWSAV  120
QERALVQALK TFPKETSQRW ERVATAVPGK TVNQCKKKFA LLKENFRSAI SNTFGRERSL  180
DMDVPKLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594661.15e-86dnaJ homolog subfamily C member 2-like
TrEMBLA0A067ENI84e-86A0A067ENI8_CITSI; Uncharacterized protein
TrEMBLA0A2R6R1392e-87A0A2R6R139_ACTCH; DnaJ subfamily C member like
STRINGcassava4.1_003314m2e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.13e-68DnaJ domain ;Myb-like DNA-binding domain