PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22021_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 237aa MW: 26387.1 Da PI: 4.3174

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22021_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.6e-09	14	46	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+ +++q+G+g +W + ++++g Neem_22021_f_1 14 KGPWSPEEDAKLKAYIEQHGTGgNWIALPQKIG 46 79***********************99999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-10	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.26E-7	8	52	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.097	9	52	IPR017877	Myb-like domain
Pfam	PF00249	3.5E-7	14	51	IPR001005	SANT/Myb domain
CDD	cd00167	2.29E-4	16	40	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QHGTGGNWIA LPQKIGVMNQ SPYWPELSVV 60 APPVIPQQLD YHFKDDESFR SLLIKLGGTF SDDHQPSITT TSSSVQYPFD VSFSQDHSYD 120 NTMSMLASPA SMTNSNGSQL PNTQFIAGPT MSQSLENFPV ELSDQLAYSN QQQLDELERF 180 YGLNVVNGST GTTSAESTSW EDMSSFVYPT IPSNYETCQQ SILQHSTFEE PRYFGHQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097403	9e-41	BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022739718.1	9e-48	transcription factor RAX3-like
TrEMBL	A0A067GTR9	7e-46	A0A067GTR9_CITSI; Uncharacterized protein
STRING	XP_006466578.1	1e-46	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17577	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	9e-27	myb domain protein 84