PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22176_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 242aa MW: 26408.2 Da PI: 6.2486

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22176_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	71	1.7e-22	5	41	27	63
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 PryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Neem_22176_f_1 5 DSPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 41 67*******************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	17.839	1	38	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-17	3	38	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-10	7	33	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MASCDSPRYF CKSCRRYWTK GGTLRNVPVG GGCRKNKRSS SSSKRSQDQQ LSSNTNPLNG 60 FPQMSYDSND LSLAFARLQK QTGGQLGFDH ENDFSILGNP TTTHCDILGN PSISSASAAT 120 PPFLDALRSG FLDTQNNFQN LYYGYGTGNM GEMDNNGVGV SAEMLMPFGD QMSSNATTTA 180 VTVTTMKQEL CNSRESENKV LWGFPWQLNA DANMGNELDS GKESWNTGLT STWHGLLNSP 240 LM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020214603.1	1e-111	dof zinc finger protein DOF2.1
TrEMBL	A0A0K8K635	1e-109	A0A0K8K635_CAJCA; Dof protein
TrEMBL	A0A151TN62	1e-109	A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRING	XP_002532252.1	1e-107	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-28	Dof family protein