PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22186_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 234aa MW: 25685.9 Da PI: 6.6633

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22186_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.4	1.6e-15	75	124	41	90
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r++++++++k+rr+r+ tr gCka ++v+++++gkw+v+kle++HnHel+ Neem_22186_f_1 75 RSTDSEDDTKRRRSRPITREGCKALMTVRRKDSGKWYVAKLEKKHNHELV 124 34444457899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-13	70	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEEEGSNAAK ELVDSYVSLE DEGNECCVVE DVQAPMVVDD NSKKVEDHVN FDLSRCLAGG 60 ILEPALGMER EKRARSTDSE DDTKRRRSRP ITREGCKALM TVRRKDSGKW YVAKLEKKHN 120 HELVTPAMRQ FLRSHKQECD LSNSSSISFG SSGLGLTASL NVLSEDCNSF GKMGLAVQNT 180 VNYIGRGRLS TFGIDAKGLL GFFKSSTKGF PSVQASILQV AYHEKNAEGN GPCV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259163.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259169.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259175.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010259184.1	1e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3
Refseq	XP_010259189.1	1e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBL	A0A1U7ZZ66	5e-82	A0A1U7ZZ66_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7ZZ72	4e-82	A0A1U7ZZ72_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A1U7ZZ81	2e-82	A0A1U7ZZ81_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBL	A0A1U8AAU0	3e-82	A0A1U8AAU0_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X3
STRING	XP_010259163.1	8e-83	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-14	FAR1-related sequence 5