PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22224_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 385aa MW: 42381.5 Da PI: 9.4695

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22224_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42	2.1e-13	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Neem_22224_f_1 76 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 120 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.32E-16	70	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.986	71	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-7	74	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-18	74	123	IPR006447	Myb domain, plants
SMART	SM00717	7.9E-11	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-11	76	120	IPR001005	SANT/Myb domain
CDD	cd00167	3.05E-8	78	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MVSVNPNRAQ GFFFFDPMNM VHPGLNSLRP TNNYNSTATS TTTTTASTKS ANSNTMSFME 60 DPSKKIRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY 120 FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA PKTTPGVSQI GGSFQSSAAL LEPGYIYRPD 180 SSSSLPGNPI PGAALSSWSY NSVPPHLDLF GYIYRPDSSS SLPGNPIPGA ALSSWSYNSV 240 PPVSVSQVTK DDVGLAGPTI PQNCCYSSSN ESTPRTWSAA ETIDRGNQGK PPRVMPDFSQ 300 VYSFLGSVFD PNATGHIQRL KQMDPINFET VLLLMKNLAI NLTSPEFENH RTLLSVYDTE 360 SQRNRFGSPC DNLHAGKSES AIPSA

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MVSVNPNRAQ GFFFFDPMNM VHPGLNSLRP TNNYNSTATS TTTTTASTKS ANSNTMSFME  60
DPSKKIRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY  120
FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA PKTTPGVSQI GGSFQSSAAL LEPGYIYRPD  180
SSSSLPGNPI PGAALSSWSY NSVPPHLDLF GYIYRPDSSS SLPGNPIPGA ALSSWSYNSV  240
PPVSVSQVTK DDVGLAGPTI PQNCCYSSSN ESTPRTWSAA ETIDRGNQGK PPRVMPDFSQ  300
VYSFLGSVFD PNATGHIQRL KQMDPINFET VLLLMKNLAI NLTSPEFENH RTLLSVYDTE  360
SQRNRFGSPC DNLHAGKSES AIPSA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU947769	2e-35	KU947769.1 Toxicodendron vernicifluum microsatellite c26331 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444958.1	0.0	protein REVEILLE 3
Refseq	XP_006491181.1	0.0	protein REVEILLE 3
Swissprot	Q6R0H0	1e-109	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A067H383	0.0	A0A067H383_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PGE8	0.0	A0A2H5PGE8_CITUN; Uncharacterized protein
TrEMBL	V4TD21	0.0	V4TD21_9ROSI; Uncharacterized protein
STRING	XP_006491181.1	0.0	(Citrus sinensis)
STRING	XP_006444958.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	2e-93	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]