PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2227_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 394aa    MW: 42999.7 Da    PI: 5.4202
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2227_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16212263155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Neem_2227_f_5 212 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 263
                    78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.377114177IPR001471AP2/ERF domain
SMARTSM003806.8E-5122183IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-9145179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-9146178IPR001471AP2/ERF domain
CDDcd000187.26E-12147179No hitNo description
PfamPF008472.0E-10212263IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18212272IPR016177DNA-binding domain
CDDcd000181.07E-11212271No hitNo description
PROSITE profilePS5103219.177213271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18213271IPR001471AP2/ERF domain
SMARTSM003801.4E-30213277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MADSPILPAL TQTHPVPKLE DFFADSSSLV HSQTETQESS LTQIYDPHAS AYFNDQQDLK  60
AIAGFQAFST NSGSEVDDST SMSRTQLPTA EFAARSIEST GNELGFSNCP TTGDIDGQVD  120
MKRIYGITAV DERVRLEKGD KASAESLGGY DKEEKAARAY DLAALKYWGP TATTNFPISN  180
YTKELEEMKH VTKQEFIASL RRKSSGFSRG ASVYRGVTRH HQQGRWQARI GRVAGNKDLY  240
LGTFATEEEA AEAYDIAAIK FRGVNAVTNF EMNRYDVEAI AKSALPIGGA AKRLKLSLES  300
EQKPTLPQDQ LPQCSSSGNN INFAPLQTVG AIPCGISFDS AAAAAALYHQ NLFHHFQTTN  360
FNTADSPGST SSMATPMTLL PQAGEYFIWP HQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036659.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ6J9N81e-102AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A061DHK60.0A0A061DHK6_THECC; AP2-like ethylene-responsive transcription factor AIL6
STRINGEOX919250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-102AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]