PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2230_f_12
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 209aa    MW: 23422.5 Da    PI: 10.0305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2230_f_12genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-05156195954
                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     Er+ R+++++    Lre++P  +       ++ +++L +Av+Y+ksL
  Neem_2230_f_12 156 ERK-RQKMRKMVKVLREIVPGgD------QMNNVAVLDEAVRYLKSL 195
                     444.699*************955......8***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.823146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-6153201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-7156200No hitNo description
Gene3DG3DSA:4.10.280.101.0E-7157202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-8157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQRDQHFYSK KVVPPFATQV GSNNIHIPVA SAFDAVLPPA AKPPMPFHGV EFQPSEVCPR  60
NFIIFDQTDH RSQIMFHPAI AQKFNGPSLN FYATYFQNNF ERNDAANVER EITARTCGNY  120
GSNSPDSSST YGSELQKNKS SSMLKSSGSS SKCNNERKRQ KMRKMVKVLR EIVPGGDQMN  180
NVAVLDEAVR YLKSLKVEVQ KLGVGNFKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RKRQKMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575001.11e-100transcription factor bHLH144
RefseqXP_015575002.11e-100transcription factor bHLH144
SwissprotQ9ASX91e-45BH144_ARATH; Transcription factor bHLH144
TrEMBLB9S1501e-98B9S150_RICCO; Uncharacterized protein
STRINGXP_002519719.12e-99(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-37bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]