PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2235_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 388aa    MW: 43888.7 Da    PI: 4.8464
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2235_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-081657338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   +r+C++++    +l+C +++ +lC++C + +H        H+
  Neem_2235_f_2 16 MRICDKCKAAVSILYCPTDSAYLCNSCDELIHPAnsmaslHE 57
                   689*******9********************93345666666 PP
2CCT65.61.4e-22322365144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Re+++lRY+eK+k RkFeKkirY+sRKa+Ae RpRvKG+F++++
  Neem_2235_f_2 322 REEKVLRYREKKKARKFEKKIRYASRKAYAEVRPRVKGKFARKT 365
                    9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-81461IPR000315B-box-type zinc finger
PROSITE profilePS501199.5421461IPR000315B-box-type zinc finger
CDDcd000212.36E-81761No hitNo description
PfamPF006436.1E-61748IPR000315B-box-type zinc finger
PfamPF062032.8E-16322364IPR010402CCT domain
PROSITE profilePS5101716.311322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLNTNCSGDG HPGNWMRICD KCKAAVSILY CPTDSAYLCN SCDELIHPAN SMASLHERVW  60
IFTACKNEPT AFTCKTDAAL FHVSCAADID LANKQGHDLV QVPEPSLSSL PYTTSKPSLS  120
SLPYTTSSTY LEELADAMLE TPNEITAATT VEVDQDEADS WLLLEPEPDN NDNQSNRGFT  180
FSEELDEIFS IVEYNSCTEN QHQDLNNQQQ LYCAYPGDNG TDGIVPVQSS EVKKQEKRRR  240
QQQPQQHQYQ KQNVYFNREY EASKAASINT PSSSQIGPMS GILSKETISD ISSSYTRYPQ  300
GTTNFFPNFS FLVPLQFASV NREEKVLRYR EKKKARKFEK KIRYASRKAY AEVRPRVKGK  360
FARKTETDFE LDEIFSTEDS EYGIVPSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485731.11e-143zinc finger protein CONSTANS-LIKE 2-like
TrEMBLA0A2H5Q4S41e-141A0A2H5Q4S4_CITUN; Uncharacterized protein
STRINGXP_006485731.11e-143(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-42CONSTANS-like 2