PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22363_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 249aa    MW: 28012.9 Da    PI: 9.9238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22363_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1332.1e-41161411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp G+rF+Ptdeelvv+yLk+kv g +l++ +vi+e+d+++++Pw+Lp  +  +e++ yfFs++++ +a++++++ a+ sgyWk  gkd+++l+ 
  Neem_22363_f_2  16 LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SVIPEFDVFQTDPWSLPGDL--KEQKRYFFSNNRNGNANDNKSKIAAGSGYWKPIGKDRQILAP 107
                     699***************************.99***************665..66899************999999******************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g++vg++ktLvf +g++ + ++t+Wvmheyrl
  Neem_22363_f_2 108 gSGQAVGIRKTLVFSQGKRAQQTQTQWVMHEYRL 141
                     78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4711170IPR003441NAC domain
PROSITE profilePS5100546.98116170IPR003441NAC domain
PfamPF023651.0E-2317141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MYMEKPNFVV NGGVKLPIGY RFRPTDEELV VHYLKRKVFG LPLPASVIPE FDVFQTDPWS  60
LPGDLKEQKR YFFSNNRNGN ANDNKSKIAA GSGYWKPIGK DRQILAPGSG QAVGIRKTLV  120
FSQGKRAQQT QTQWVMHEYR LAGAATNPDS IYLIPKMEIG DWVVYRIFQR KRKPKKHRAV  180
SNQTTNVEVT PRPSCINFTI EADQSDLLGP PQPSPSSSEI TADVIPATTV LDQEETSGYG  240
YSCSCTRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-331417618174NAC domain-containing protein 19
3swm_B2e-331417618174NAC domain-containing protein 19
3swm_C2e-331417618174NAC domain-containing protein 19
3swm_D2e-331417618174NAC domain-containing protein 19
3swp_A2e-331417618174NAC domain-containing protein 19
3swp_B2e-331417618174NAC domain-containing protein 19
3swp_C2e-331417618174NAC domain-containing protein 19
3swp_D2e-331417618174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175QRKRKPKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447003.11e-105NAC domain-containing protein 83
RefseqXP_006468841.11e-105NAC domain-containing protein 83-like
TrEMBLV4TIL51e-104V4TIL5_9ROSI; Uncharacterized protein
STRINGXP_006468841.11e-105(Citrus sinensis)
STRINGXP_006447003.11e-105(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.17e-54NAC domain containing protein 84