PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2242_f_12

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 433aa MW: 48896.4 Da PI: 7.2984

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2242_f_12	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	278.1	2.7e-85	58	427	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfs 94 lL++ Ae +s+++ + a ++L+ s l+s++g+++qR+a++ft+AL++r+ r++ ++ + + + + + +e++++l+ s P++++s Neem_2242_f_12 58 LLVASAEEISKEQYASAGKFLNLCSFLSSNRGNSVQRVAHCFTKALQERIDRETGRVETKRSERIEGQILPEEKIMSLNPavitSSLQLPFIQVS 152 799***********************************************6666655544444443345556555543444355568** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +l+ qaI+e v++++++H iDf+i G++ aL+qaLa+R+ + l+iT+vg sk+++ee gerLa+fAe+l +pf f++ + +++d Neem_2242_f_12 153 QLAGIQAIMENVATAKKIHLIDFSIRSGGHCTALMQALAARNeCSLELLKITAVGT---LSKKTIEEAGERLANFAEALAIPFAFKIAALADIKD 244 **************************************445669****...68**********************8888 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ + ++++++E+++V++ l+l +l +++ les vL++v++l+P+v+v++e ea hns++F +rf e+l++ysa fdsle+ l+r + +r+ Neem_2242_f_12 245 INEDIFEINEDEVVVVSSRLMLRHLISKPDGLES----VLRVVRNLNPRVMVIIELEAHHNSPTFIDRFYETLYFYSAYFDSLEVCLHRCDTNRM 335 **********************88888888....***************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++E+ +l++ei+n++a+eg+er+ r+ + Wr ++++G+ + ++s ++ qa+l+ k+ + +++++ ++l+ gWk+ p++s+SaW+ Neem_2242_f_12 336 TLEALYLSEEIRNIIATEGEERIFRNMKIDAWRYHFRSFGMIEREVSISTFYQAELVAGKFTrGISCTLDKNGKCLTVGWKGTPILSLSAWK 427 **********************************************************5555889999*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.732	29	406	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-83	58	427	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MASVRRLSTE DVMRIARTRF IKLSSQGHAD ISMFNHSFEG NHFGLSVEDI KDVELALLLV 60 ASAEEISKEQ YASAGKFLNL CSFLSSNRGN SVQRVAHCFT KALQERIDRE TGRVETKRSE 120 RIEGQILPEE KIMSLNPAVI TSSLQLPFIQ VSQLAGIQAI MENVATAKKI HLIDFSIRSG 180 GHCTALMQAL AARNECSLEL LKITAVGTLS KKTIEEAGER LANFAEALAI PFAFKIAALA 240 DIKDINEDIF EINEDEVVVV SSRLMLRHLI SKPDGLESVL RVVRNLNPRV MVIIELEAHH 300 NSPTFIDRFY ETLYFYSAYF DSLEVCLHRC DTNRMTLEAL YLSEEIRNII ATEGEERIFR 360 NMKIDAWRYH FRSFGMIERE VSISTFYQAE LVAGKFTRGI SCTLDKNGKC LTVGWKGTPI 420 LSLSAWKFRK AKN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MASVRRLSTE DVMRIARTRF IKLSSQGHAD ISMFNHSFEG NHFGLSVEDI KDVELALLLV  60
ASAEEISKEQ YASAGKFLNL CSFLSSNRGN SVQRVAHCFT KALQERIDRE TGRVETKRSE  120
RIEGQILPEE KIMSLNPAVI TSSLQLPFIQ VSQLAGIQAI MENVATAKKI HLIDFSIRSG  180
GHCTALMQAL AARNECSLEL LKITAVGTLS KKTIEEAGER LANFAEALAI PFAFKIAALA  240
DIKDINEDIF EINEDEVVVV SSRLMLRHLI SKPDGLESVL RVVRNLNPRV MVIIELEAHH  300
NSPTFIDRFY ETLYFYSAYF DSLEVCLHRC DTNRMTLEAL YLSEEIRNII ATEGEERIFR  360
NMKIDAWRYH FRSFGMIERE VSISTFYQAE LVAGKFTRGI SCTLDKNGKC LTVGWKGTPI  420
LSLSAWKFRK AKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-36	63	429	27	381	Protein SCARECROW
5b3h_A	2e-36	63	429	26	380	Protein SCARECROW
5b3h_D	2e-36	63	429	26	380	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811561.1	1e-180	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A2I4DWN6	1e-178	A0A2I4DWN6_JUGRE; DELLA protein RGL1-like
STRING	EOY06703	1e-176	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25763	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	5e-42	RGA-like 2