PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2242_f_9
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 135aa    MW: 15989.2 Da    PI: 10.4662
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2242_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-101955541
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                   k+ +r+q+NRe+A+rsR++++++++ L +++++L+++
  Neem_2242_f_9 19 KKRKRMQSNRESAKRSRLKREQRVKDLVNEIQTLKEQ 55
                   899*******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-81579IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3121780IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-71793No hitNo description
PfamPF001701.4E-71977IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-81972No hitNo description
CDDcd147021.95E-102071No hitNo description
PROSITE patternPS0003602237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSSCSRKTSE LEAAIMDEKK RKRMQSNRES AKRSRLKREQ RVKDLVNEIQ TLKEQILEFN  60
RQYNDMTQRT HNLSSENESL NLEKAKLGEY LNSLYSVYVR FTHQMSQTTG CLSKQKTWEV  120
RNQMRPFITT GMSKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419404.18e-48bZIP transcription factor 53
TrEMBLA0A2H5N7W62e-46A0A2H5N7W6_CITUN; Uncharacterized protein
TrEMBLV4U0922e-46V4U092_9ROSI; Uncharacterized protein
STRINGXP_006419404.13e-47(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30362763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-12basic region/leucine zipper motif 53