PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22535_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 504aa MW: 55634.7 Da PI: 8.5825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22535_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.5e-06	411	449	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Neem_22535_f_2 411 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 449 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	400	449	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.56E-7	410	454	No hit	No description
SuperFamily	SSF47459	1.7E-10	410	457	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0014	411	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	414	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MIILCNLKTS EKNQRAREIK IHHQLNIATI KQETSEKNQR AREIKIHHQL NIATIKQQLL 60 YLAMADESNT TTNWWESSRN RFDSGSSSSS SALNNSLGSF GWPTEMVDIK AARSSIDSSA 120 SVSGSSVVFQ DSQKLQQGPD SAGSDLHMMG LGLSSPSLDW YQALVPGDKS GRSFRSMLQD 180 SNANYQQETG MGSSQVQWPR EKVFPGISGD STVTEFKQMS RGFSLDQPQF SPHGSSTDST 240 VKCQGLPSSF QMDSTALYGN PSTIFQGILG SENQPHQSAA SFENRSVNYH YGASTYGMNT 300 SEVLPSWSGN KVPQFSRTSS PKQQPQHTHL HFSNNAPFWN ASAASMNDVR ASGFFPTLQT 360 PYQTQAFDEK PKQIISEVRE SSTAVKKSCG SEPASKRARN ETPSPLPAFK VRKEKMGDRI 420 TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVHNNSDKS KDNEGPKQDL RSRGLCLVPV 480 SSTFPVTHET TVDFWTPTFG GTFR

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MIILCNLKTS EKNQRAREIK IHHQLNIATI KQETSEKNQR AREIKIHHQL NIATIKQQLL  60
YLAMADESNT TTNWWESSRN RFDSGSSSSS SALNNSLGSF GWPTEMVDIK AARSSIDSSA  120
SVSGSSVVFQ DSQKLQQGPD SAGSDLHMMG LGLSSPSLDW YQALVPGDKS GRSFRSMLQD  180
SNANYQQETG MGSSQVQWPR EKVFPGISGD STVTEFKQMS RGFSLDQPQF SPHGSSTDST  240
VKCQGLPSSF QMDSTALYGN PSTIFQGILG SENQPHQSAA SFENRSVNYH YGASTYGMNT  300
SEVLPSWSGN KVPQFSRTSS PKQQPQHTHL HFSNNAPFWN ASAASMNDVR ASGFFPTLQT  360
PYQTQAFDEK PKQIISEVRE SSTAVKKSCG SEPASKRARN ETPSPLPAFK VRKEKMGDRI  420
TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVHNNSDKS KDNEGPKQDL RSRGLCLVPV  480
SSTFPVTHET TVDFWTPTFG GTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017979565.1	0.0	PREDICTED: transcription factor bHLH123 isoform X3
Refseq	XP_021287909.1	0.0	transcription factor bHLH123 isoform X1
Refseq	XP_021287910.1	0.0	transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	9e-75	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A061F6M7	0.0	A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRING	EOY12661	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]