PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22568_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 210aa MW: 23148.5 Da PI: 10.392

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22568_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.8e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + + R+ ++k++w++ Neem_22568_f_1 5 KQKWTAEEEAALKAGVVKHGTGKWRTILSDPEfsailQSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.524	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.39E-16	2	71	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-14	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	9.07E-20	6	57	No hit	No description
SuperFamily	SSF46785	2.45E-8	146	202	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	12.023	148	210	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.4E-6	149	184	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	7.8E-6	153	185	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGTGKWRT ILSDPEFSAI LQSRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRTSWTPK HDGRTPVTSK RDAKSQLTPK HDGRIHLTPK HDESPMALST 120 IPQNDGVVDA KPLAISSGTV RASGSKEPVA RLDKLIMEAI ANLKEPSGSD RASIMNYIED 180 TFSACNALYH GDFVFNMLLQ KVFSFLPSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426109.1	1e-104	telomere repeat-binding factor 2 isoform X2
Refseq	XP_006466449.1	1e-104	telomere repeat-binding factor 2 isoform X2
Refseq	XP_024947953.1	1e-104	telomere repeat-binding factor 2 isoform X1
Swissprot	Q9FJW5	3e-50	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	V4UJ20	1e-102	V4UJ20_9ROSI; Uncharacterized protein
STRING	XP_006426109.1	1e-103	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	1e-52	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]