PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22647_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 229aa MW: 26086.4 Da PI: 10.3255

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22647_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.4e-16	131	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp f++e+ +k ++ ++l de+g ++ + rk++ l++GWk F+ a+gL +gD +vF+l++++ f +v Neem_22647_f_1 131 FVKSMLKSHVTGGFWLGLPGYFCRENL-PK-SDDVISLIDEEGDEYPTIYLARKTG----LSGGWKAFAVAHGLVDGDALVFQLIRSMAF--KVY 217 89**********************4.32.4458***********656665....***********************99999..888 PP EE- CS B3 96 vfr 98 ++r Neem_22647_f_1 218 IIR 220 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.37E-22	124	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-19	124	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.58E-25	129	220	No hit	No description
SMART	SM01019	8.5E-24	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.28	131	222	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-13	131	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVTAKAKPSY EDCRLRRLEE NKKRMEALNL PMLSQALRKK PSFKSSPMKQ VKPRTVEKKA 60 IALSLRRSSR VAKMPAPVYN EVNRVRVEIP RRIYNRRDLS NRVYASDAAR ADAIEKAEKL 120 ESRLDTECPT FVKSMLKSHV TGGFWLGLPG YFCRENLPKS DDVISLIDEE GDEYPTIYLA 180 RKTGLSGGWK AFAVAHGLVD GDALVFQLIR SMAFKVYIIR GTEEVYLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434799.1	1e-122	B3 domain-containing protein At5g42700 isoform X1
Swissprot	Q9FMZ4	6e-71	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2H5NH51	1e-121	A0A2H5NH51_CITUN; Uncharacterized protein
TrEMBL	V4V7F6	1e-121	V4V7F6_9ROSI; Uncharacterized protein
STRING	XP_006434799.1	1e-122	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-73	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]