PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22787_a_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 82aa    MW: 9472.71 Da    PI: 5.1443
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22787_a_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.6e-10856247
                     SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                     ++W+ eE + + ++v+++ ++     W +I + ++ ++t  ++k++++k+
   Neem_22787_a_3  8 NPWSWEENKAFENGVAMYYKNggedEWVKIRSLVP-TKTIDEIKLHFRKL 56
                     79****************9999*************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-6659IPR001005SANT/Myb domain
PfamPF002493.7E-8856IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-6857IPR009057Homeodomain-like
SuperFamilySSF466891.65E-10863IPR009057Homeodomain-like
CDDcd001673.04E-7957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MSGSSGTNPW SWEENKAFEN GVAMYYKNGG EDEWVKIRSL VPTKTIDEIK LHFRKLVEDL  60
QLIESGIIPD SLPYEDKKQK QK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292289.16e-15transcription factor MYBS1
TrEMBLA0A067DXJ83e-29A0A067DXJ8_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PQ563e-29A0A2H5PQ56_CITUN; Uncharacterized protein
TrEMBLV4VBS63e-29V4VBS6_9ROSI; Uncharacterized protein
STRINGXP_006436529.15e-30(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2577033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-14MYB family protein