PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23019_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 408aa    MW: 45199.9 Da    PI: 5.9867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23019_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.1e-110453971304
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ +   +see+ ++klf+e++P+lk+++
  Neem_23019_f_2  45 LIHLLLSCANHVASGSLENANIALEQISQLASPDGDTMQRIAAYFTEALAQRILKAWPGLHKALNSTRIT--LVSEEMLVRKLFFEMFPFLKVAF 137
                     689*************************************************************999987..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHiiD+ + +++QW+aLlqaL++Rpegpp+lRiTg++s    +ke l ++++ L++ Ae+l++pf+fn  +++rle+l+
  Neem_23019_f_2 138 VLTNQAIIEAMEGEKMVHIIDLHAAEPAQWIALLQALSTRPEGPPHLRITGIHS----QKEVLDRMAHILSEEAEKLDIPFQFNS-IVSRLENLD 227
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles..erdevLk 229
                     +e+Lrvk+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+
  Neem_23019_f_2 228 FEKLRVKTGEALAISSVLQLHSLLaiddeilqkrsslglknaygvhlqrvlqmnqstlgellekdlangyspspdsasSSPLSLNAsgKMDSFLN 322
                     ****************************************************************************9955555554557888*** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                      +++lsPk++vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++ac  ++
  Neem_23019_f_2 323 SLWGLSPKIMVVTEQDSKHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACHLFH 397
                     ***********************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.32919408IPR005202Transcription factor GRAS
PfamPF035141.1E-10745397IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQFFS MMSPSLGSPY PWLKELKSEE RGLYLIHLLL SCANHVASGS  60
LENANIALEQ ISQLASPDGD TMQRIAAYFT EALAQRILKA WPGLHKALNS TRITLVSEEM  120
LVRKLFFEMF PFLKVAFVLT NQAIIEAMEG EKMVHIIDLH AAEPAQWIAL LQALSTRPEG  180
PPHLRITGIH SQKEVLDRMA HILSEEAEKL DIPFQFNSIV SRLENLDFEK LRVKTGEALA  240
ISSVLQLHSL LAIDDEILQK RSSLGLKNAY GVHLQRVLQM NQSTLGELLE KDLANGYSPS  300
PDSASSSPLS LNASGKMDSF LNSLWGLSPK IMVVTEQDSK HNGSTLMERL LEALYSYAAL  360
FDCLESTVSR TSLERLKVEK MLFGEEIKNI IACHLFHSSH SPSHGTGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-40282411216Protein SCARECROW
5b3h_D2e-40282411216Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]