PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23027_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 177aa    MW: 19848.7 Da    PI: 10.3491
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23027_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-114285548
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
                    kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Neem_23027_f_1 42 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 85
                    8999********************************98877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-1338102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.6224092IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-114296No hitNo description
PfamPF001701.1E-94285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-114293No hitNo description
CDDcd147032.39E-184393No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
PPDQKPQIRK ESDEVQSQCK TEAQALPSSA ANNSSDRIID PKRVKRILAN RQSAQRSRVR  60
KLQYISELER SVTSLQAEVS VLSPRVAFLD HQRLLLNVDN SALKQRIAAL AQDKIFKDAH  120
QEALKREIER LRQVYHQQNL KKMENGGASP APAPAPPQAA AEAKACMPME KEQLLNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469052.17e-91basic leucine zipper 61
SwissprotQ9M2K44e-81BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2H5QQA04e-89A0A2H5QQA0_CITUN; Uncharacterized protein
STRINGXP_006469052.13e-90(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-80bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]