PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23068_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 194aa    MW: 21358.5 Da    PI: 5.2725
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23068_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.12.1e-13156194144
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak 44 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+
  Neem_23068_f_1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAAR 194
                     78*******************......55**********887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-7156194IPR016177DNA-binding domain
CDDcd000181.81E-12156194No hitNo description
PfamPF008479.6E-6156192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-7157194IPR001471AP2/ERF domain
SMARTSM003801.4E-4157194IPR001471AP2/ERF domain
PROSITE profilePS5103211.93157194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLDLNLSVAS VDHSGFNDKF LELSNYPMES SGSFNSSVIN ADTAGDCSPS SSDNVTAPCY  60
IFSILKDCSN NESSQTVNDR QEENIRGKTI QFFPMNSGGY DEGQPSASQI NEGLDLTCQS  120
ADYCCSVPGQ QMIAPEIQRR QTTAKKSRRG PRSKSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAL AAAR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2288634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.13e-21AP2 family protein