PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23158_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 182aa    MW: 21223.9 Da    PI: 7.7238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23158_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.52.5e-27241553128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevl 93 
                      G+ F+Pt+ee+v ++L+ kv+g +  +++++ike+++y++eP++Lp  ++++++++ yfF+  ++     +  r  r tk gyWk tg+   ++
  Neem_23158_f_1  24 HGYVFSPTEEEIV-YFLELKVSGVTgRPEFDHIKEIKLYEYEPSELPsIAYDSGHEQFYFFTLMSEPLMryRHGRFGRRTKGGYWKITGRASVIK 117
                     699**********.********9998777799***************55777788899***9988755422466888899*************** PP

             NAM  94 skkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                     + +g+    k+ Lv++   k +a+ +++t+W+m+ey l
  Neem_23158_f_1 118 NGDGNPLASKRFLVYHmqdKDEASGSVRTHWCMKEYVL 155
                     *9**************65445666667*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-2920172IPR003441NAC domain
PROSITE profilePS5100529.03122173IPR003441NAC domain
PfamPF023653.4E-1324155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MREFRKEPSP IEGEVFFQSN ASVHGYVFSP TEEEIVYFLE LKVSGVTGRP EFDHIKEIKL  60
YEYEPSELPS IAYDSGHEQF YFFTLMSEPL MRYRHGRFGR RTKGGYWKIT GRASVIKNGD  120
GNPLASKRFL VYHMQDKDEA SGSVRTHWCM KEYVLQSQNN EQSSWALCVV HLRHKKGENL  180
NS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-18NAC domain containing protein 35