PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23242_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 100aa    MW: 11311.2 Da    PI: 8.4875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23242_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-081052248
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48
                    r+  n+ E++RR ++ + + +L +++P++   p  Kls  ei+ +A+
  Neem_23242_f_1 10 RAQRNIKEKKRRMEMGDLLLKLASHIPPQ---P-SKLSVPEIVDQAT 52
                    8889************************6...3.89**999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.89E-8567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.724858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-51061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-51052IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MARPTSSESR AQRNIKEKKR RMEMGDLLLK LASHIPPQPS KLSVPEIVDQ ATMNLICGLT  60
NRNFMLYEII SVLEDEGAEV IDATQLNQGD RIIYIIKSKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046481.15e-28transcription factor bHLH167
TrEMBLA0A2H5PEV92e-26A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEY13e-26A0A2H5PEY1_CITUN; Uncharacterized protein
STRINGXP_006446341.11e-25(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.19e-16bHLH family protein