PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_23265_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 144aa MW: 16857.6 Da PI: 9.3611

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23265_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	3	66	28	90
FAR1 28 itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 i+ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ gkw+vtk++ eHnH+l Neem_23265_f_2 3 IIGRDFVCSREGFRSAKHALrKDRVLPPRPITREGCKAMIRLAARDGGKWVVTKFVREHNHKLL 66 7889*********9998823333349********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-15	3	66	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MAIIGRDFVC SREGFRSAKH ALRKDRVLPP RPITREGCKA MIRLAARDGG KWVVTKFVRE 60 HNHKLLTHCR FPGELPMVNI LSEEEKDRKI QDLYNELQRE RERSGAIQQQ LLMVLKDLEE 120 HAEFMSIRVE DIVNRLKEIE LNGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478703.1	6e-91	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044852.1	6e-91	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044853.1	6e-91	protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A067E5U0	1e-89	A0A067E5U0_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QLK3	1e-89	A0A2H5QLK3_CITUN; Uncharacterized protein
TrEMBL	V4T7M3	1e-89	V4T7M3_9ROSI; Uncharacterized protein
STRING	XP_006478703.1	2e-90	(Citrus sinensis)
STRING	XP_006443023.1	2e-90	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-31	FAR1 family protein