PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23449_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 112aa    MW: 12835.1 Da    PI: 8.1645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23449_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.8e-121085373
             NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkr 73
                    +G  F  +deelv +yL +kv+g ++++ e  +ke+d+y  eP ++ +    ++ ++++++yfF+k +kk+++ + 
  Neem_23449_f_2 10 VGHGFMLSDEELVEYYLYRKVSGIPIPFVEYfVKECDLYGDEPGKIWNsyggNLLKGDEDLYFFTKLKKKTPNPEL 85
                    6888999******************9998877**************74355555558899*********9987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.9538112IPR003441NAC domain
SuperFamilySSF1019414.58E-12884IPR003441NAC domain
PfamPF023656.3E-61191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MYETGPCIIV GHGFMLSDEE LVEYYLYRKV SGIPIPFVEY FVKECDLYGD EPGKIWNSYG  60
GNLLKGDEDL YFFTKLKKKT PNPELTAKLV WMGVLGKGKM LLLKLFLAKP RS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387713.11e-25NAC transcription factor 56-like
TrEMBLV4TAK72e-24V4TAK7_9ROSI; Uncharacterized protein
STRINGXP_006437042.14e-25(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.16e-10NAC domain containing protein 45