PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2368_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 153aa    MW: 16846.9 Da    PI: 4.7786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2368_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-161262155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   ++ykG+r++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  Neem_2368_f_5 12 KKYKGIRRRK-WGKWVSEIRVP---G-SqNRLWLGSYATPEAAAVAHDVAFYCLRR 62
                   59*****998.**********8...3.349*******************9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.26E-241272No hitNo description
PROSITE profilePS5103220.9291372IPR001471AP2/ERF domain
PfamPF008476.6E-91361IPR001471AP2/ERF domain
SMARTSM003807.5E-251378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-241372IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-161372IPR016177DNA-binding domain
PRINTSPR003673.2E-81425IPR001471AP2/ERF domain
PRINTSPR003673.2E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGSNVEENGA QKKYKGIRRR KWGKWVSEIR VPGSQNRLWL GSYATPEAAA VAHDVAFYCL  60
RRPPSLDGIN FPLMLPASLN AEMSPKSVQK AASDAGMAVD AQMVLNKSAN NETEVNGNGG  120
IQALDTTQFW GDDESLVQWE EKELSISVDD YLN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478270.14e-75ethylene-responsive transcription factor ERF020
SwissprotQ9C9I82e-49ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2H5Q4M31e-72A0A2H5Q4M3_CITUN; Uncharacterized protein
STRINGXP_006478270.12e-74(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]