PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23729_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 182aa    MW: 21246.9 Da    PI: 7.289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23729_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.11.1e-4671333128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      G+rF+P++ee+++++L++k++g  +++ ++i+evdi+k+ePw+Lp +++  +++ewyfF k   kya++ r++r+tk+gyWk tg+d+++l++ 
  Neem_23729_f_1   7 LGYRFRPSEEEIIMYFLERKMHGLGFPV-HTINEVDICKFEPWELPaQSALLDDEEWYFFNKPTLKYANSARTERTTKAGYWKVTGQDRPILDNr 100
                     59**************************.78***************555556999*************************************986 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++glkk Lvf++grap+g+kt+Wvmhey+ 
  Neem_23729_f_1 101 GKNVIGLKKNLVFHTGRAPNGVKTSWVMHEYHS 133
                     6778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0815163IPR003441NAC domain
SuperFamilySSF1019411.03E-497139IPR003441NAC domain
PfamPF023652.1E-228132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDDINYLGYR FRPSEEEIIM YFLERKMHGL GFPVHTINEV DICKFEPWEL PAQSALLDDE  60
EWYFFNKPTL KYANSARTER TTKAGYWKVT GQDRPILDNR GKNVIGLKKN LVFHTGRAPN  120
GVKTSWVMHE YHSNNASAYQ AYISIYLLDG VKTSWVMHEY HSNNASAYQA FSNYFALPYS  180
VH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-37813218139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043356.13e-71NAC domain-containing protein 71-like
TrEMBLA0A067H3T15e-55A0A067H3T1_CITSI; Uncharacterized protein
TrEMBLV4TC693e-57V4TC69_9ROSI; Uncharacterized protein
STRINGXP_006491410.11e-69(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1860648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.14e-42NAC family protein