PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23813_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 243aa    MW: 28913.3 Da    PI: 8.3996
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23813_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.8e-1445104266
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     W+++e laL+++r+++e+++ +       We+vs+k+ e g++rs+++Ckek+e+ ++ + +++ 
  Neem_23813_f_1  45 WSNDELLALLRIRSSLENWFPEL-----TWEHVSRKLDELGYKRSAEKCKEKFEEESRSFNNMNY 104
                     ********************987.....9****************************99998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3534396IPR017877Myb-like domain
PfamPF138373.4E-1044106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQPSAAAPKN EEKEEKINRS SSLVGMNNLE TERERSIAEP VDSAWSNDEL LALLRIRSSL  60
ENWFPELTWE HVSRKLDELG YKRSAEKCKE KFEEESRSFN NMNYNKNYRI FFSEFVDEYD  120
DEEQLYHGRQ NPQKVEQNKK MEQPRGEEEE DKTTHEQNLE GDPTNNQTVG NKPSDRPQDK  180
ENRLVEKALL KGKKRKRDEN FEIEMKRRLR EKKLGRSKKW IGLTRNLKLG LLNKQLRVID  240
KQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913154.13e-45trihelix transcription factor GTL2
TrEMBLV4T9I83e-42V4T9I8_9ROSI; Uncharacterized protein
STRINGXP_006471910.13e-43(Citrus sinensis)
STRINGXP_006432981.15e-43(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.16e-16Trihelix family protein