PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_23926_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 368aa MW: 40627.4 Da PI: 7.1561

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23926_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.5	2.2e-07	93	118	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+i+l++l++yF++++kdAAk++g Neem_23926_f_4 93 AEKTITLQVLRQYFAGSLKDAAKSIG 118 589*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00666	1.1E-25	271	354	IPR000270	PB1 domain
PROSITE profile	PS51745	25.665	271	354	IPR000270	PB1 domain
SuperFamily	SSF54277	3.64E-23	272	354	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.4E-24	272	350	No hit	No description
Pfam	PF00564	5.6E-19	272	352	IPR000270	PB1 domain
CDD	cd06407	3.61E-44	272	352	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MFKVDTHSEK YSQENSCWTA CVTAVQKDCD VSLNQKGEPR MVPGEKFLKL FKCGDKDFSL 60 KGSGEYFGDS NSVEGSFSSV ALGRTGEKRR TKAEKTITLQ VLRQYFAGSL KDAAKSIGGD 120 SGSLQIGSFY TNFRELASPN VSGTSPLSTS MPADHSKPTS MKPKGRNFKP RAAKSPSSSC 180 SQSSSSSQCV SSGQHPSVNN IAGGEDPMVG ESSGDVVLKR GRGEAELHAS SEEPKLMPRS 240 QSYKSLREQH TSELLPSLPE NYGRISQDVD GHRVKVTFGE EKIRLRIQDN WKFQDLSQEI 300 ARRFSIEDMS LFDLKYLDDD SEWVLLTCDA DLEECIDVCR LSQSQTIKLS LQISHHLMER 360 RLGCSSNS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MFKVDTHSEK YSQENSCWTA CVTAVQKDCD VSLNQKGEPR MVPGEKFLKL FKCGDKDFSL  60
KGSGEYFGDS NSVEGSFSSV ALGRTGEKRR TKAEKTITLQ VLRQYFAGSL KDAAKSIGGD  120
SGSLQIGSFY TNFRELASPN VSGTSPLSTS MPADHSKPTS MKPKGRNFKP RAAKSPSSSC  180
SQSSSSSQCV SSGQHPSVNN IAGGEDPMVG ESSGDVVLKR GRGEAELHAS SEEPKLMPRS  240
QSYKSLREQH TSELLPSLPE NYGRISQDVD GHRVKVTFGE EKIRLRIQDN WKFQDLSQEI  300
ARRFSIEDMS LFDLKYLDDD SEWVLLTCDA DLEECIDVCR LSQSQTIKLS LQISHHLMER  360
RLGCSSNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435364.1	1e-154	protein NLP4
TrEMBL	A0A067GZS4	1e-153	A0A067GZS4_CITSI; Uncharacterized protein
TrEMBL	V4TAM9	1e-153	V4TAM9_9ROSI; Uncharacterized protein
STRING	XP_006435364.1	1e-154	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	5e-60	Nin-like family protein