PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24150_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

DBB

Protein Properties

Length: 270aa MW: 29799.7 Da PI: 4.3773

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24150_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	16	54	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++ k + l+C+ ++ lC C + H+ H Neem_24150_f_1 16 PCDFCNTKLAVLYCQADSAKLCLFCDQRVHSAnalslkH 54 6**************************999555666666 PP
2	zf-B_box	18.3	5e-06	58	102	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++ C + + +lC+dC +H++ H+++p+ Neem_24150_f_1 58 QICENCITEPVSVRCSTENLMLCQDCDWDSHSNcsvsclHERSPV 102 79*****************************88999999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.7E-9	12	59	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-6	16	56	IPR000315	B-box-type zinc finger
CDD	cd00021	5.60E-6	16	47	No hit	No description
PROSITE profile	PS50119	9.286	17	59	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.93	55	102	IPR000315	B-box-type zinc finger
CDD	cd00021	0.00123	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEKGSRLKPG SFMLAPCDFC NTKLAVLYCQ ADSAKLCLFC DQRVHSANAL SLKHVRTQIC 60 ENCITEPVSV RCSTENLMLC QDCDWDSHSN CSVSCLHERS PVEGFSGCPS VIELAAFSDL 120 DIKAENLMNM GSGFGVYEPK ILNSQELVVP EQSCSVFVSC GNYKQEVYEQ LMEMGKTDLV 180 IFNGDGDQLG PGTPPSRCSQ QGHTESLEVE NIDKEELLHQ QTPFSSLLMF PPNTDLRDND 240 CSFLEGDLTW VSNAAYQTAQ VGAKIHFVPN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446976.1	1e-124	zinc finger protein CONSTANS-LIKE 14 isoform X2
Refseq	XP_006468864.1	1e-124	zinc finger protein CONSTANS-LIKE 14-like isoform X1
Swissprot	Q9C7E8	1e-52	COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBL	V4U2X2	1e-125	V4U2X2_9ROSI; Uncharacterized protein
STRING	XP_006468864.1	1e-123	(Citrus sinensis)
STRING	XP_006446976.1	1e-123	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19226	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	4e-55	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]