PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24181_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 233aa    MW: 25859.2 Da    PI: 4.6925
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24181_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS35.31.6e-11150222173
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                     l++lL+e A a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r +  +s l++ l++s+++++ 
  Neem_24181_f_1 150 LITLLFESAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRPST-MSLLSSNLHTSPQTKQP 222
                     5789*******************************9999**************998.88888888888887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.457124233IPR005202Transcription factor GRAS
PfamPF035145.6E-9150222IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMKGGFEVVR GALEMIQPHE RWDYSSIGFP TPSPNSFPIP TSNVIDNRCA NLERNDLSEW  60
VEHVTKQLID DLPDANSDSL QADAMMVCEN NPIPSILGDL RTRKTMRRSY FEGNGEEFQW  120
VNELGNQTNV CENGSSNRVL TKVDEQGLSL ITLLFESAVA ISVDNLGEAH RMLLELTQMA  180
SPYGPSCAER VVAYFAKAMA SRPSTMSLLS SNLHTSPQTK QPSRLFIVAI GFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050241.23e-91PREDICTED: protein SCARECROW
TrEMBLB9H8P82e-89B9H8P8_POPTR; Uncharacterized protein
STRINGEOX943983e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160051115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-11GRAS family protein