PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24189_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 45aa MW: 5364.14 Da PI: 8.7597

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24189_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.7	1.1e-12	13	41	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 rg+WT++Ede+l+++++++G g+W++I++ Neem_24189_f_3 13 RGPWTKQEDEKLIEYIRKHGEGCWRLIPQ 41 89*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-14	5	42	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.352	8	45	IPR017930	Myb domain
SuperFamily	SSF46689	4.9E-10	10	43	IPR009057	Homeodomain-like
Pfam	PF00249	6.5E-11	13	41	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-7	15	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 45 aa Download sequence Send to blast
MRNPYCDKQV SNRGPWTKQE DEKLIEYIRK HGEGCWRLIP QATGM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072198.1	6e-18	transcription repressor MYB4 isoform X2
Swissprot	P20025	4e-15	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	A0A067FF41	7e-17	A0A067FF41_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A1Q3CWJ2	2e-16	A0A1Q3CWJ2_CEPFO; Myb_DNA-binding domain-containing protein
TrEMBL	A0A314XUR1	2e-16	A0A314XUR1_PRUYE; R2R3-MYB transcription factor
TrEMBL	A0A314YJV1	7e-17	A0A314YJV1_PRUYE; Myb-related protein 308-like isoform X1
STRING	XP_006495052.1	5e-17	(Citrus sinensis)
STRING	EMJ25070	7e-17	(Prunus persica)
STRING	XP_004297358.1	7e-17	(Fragaria vesca)
STRING	XP_006448287.1	5e-17	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	1e-16	myb domain protein 6

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]