PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2442_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-PHD
Protein Properties Length: 1083aa    MW: 119340 Da    PI: 5.4446
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2442_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.53.6e-119129501452
                    HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    +L + F++n+yp++ ++e LAk+lg+t +qV+ WF N R
  Neem_2442_f_6 912 TLYKSFKENQYPDRIKKEALAKELGITFSQVSRWFENTR 950
                    799**********************************99 PP
2PHD39.71.1e-13537592151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ Cg+    ++++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Neem_2442_f_6 537 YCAKCGSkdLSADNDIILCDGaCDRGFHQYCLEPPLLKEDIPPDdeGWLCPGCDCK 592
                    7******77677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.42E-14527595IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-13533592IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.145535592IPR019787Zinc finger, PHD-finger
PfamPF006283.9E-11537592IPR019787Zinc finger, PHD-finger
CDDcd155049.87E-28537589No hitNo description
SMARTSM002495.9E-10537590IPR001965Zinc finger, PHD-type
PROSITE patternPS013590538589IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003891.0E-6886960IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-11911953IPR009057Homeodomain-like
SuperFamilySSF466893.59E-11911956IPR009057Homeodomain-like
CDDcd000864.80E-11911950No hitNo description
PfamPF000461.4E-8912950IPR001356Homeobox domain
PROSITE profilePS5007112.665913956IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MSKAEYMAVS PSKVSGQTGN HSSLKQNTSE EAGKFGAAYI HSESSESKHL LGPEAAQSEP  60
QDTITSVTRS PQNHKLPTFC GDMPDNSFTE HLLPPPEDAS KSIQTNNSSC SQKNASEHEH  120
EVGSDCLHGK QLEQKHQLDI HIVHSEPGET SLVLCSSVDN DKLRTVSQDL SNLSQSESKQ  180
TLEFCSRNGC IELDINCVCA EPSEQLGSEH NEPADTDALV SSGVVHENWQ TVSEDMTKII  240
PNEPLQSPPR DVNNSCQIGE KLWPQQSTSE QTHEVTAGIA SHEPLEENNK LDSQLVQNKS  300
MEISTAIPCN IANGQLGCPP EVVIKISPLE HLKQPEVPIA SPISEHVGTN SDDMTKNYSL  360
EQSGTPSKRA VNNCRSLGCK GKKASKGLKK KYMLRSVRGS DRVLRSSSVE KTKALEPSNN  420
KVDASAVRGR KRKKQKNRRG KIVPDEYSRI RTHLRYLVNR INYEQSLIAA YSGEGWKGLS  480
IEKLKPEKEL QRATSEILRR KLKIRDLFQH LDSLCAEGAF PKSLFDSEGQ IDSEDIYCAK  540
CGSKDLSADN DIILCDGACD RGFHQYCLEP PLLKEDIPPD DEGWLCPGCD CKVDCIDLVN  600
ESQGTNLFIT DKWEKVFPEA AAAAGRNQDP NFGLPSDDSD DNDYDPDGLS TDEKDQGDEA  660
SSDESDFTST SEDLEASAND KEYLGLPSDD SEDDEYNPDA PELDEKVMHE NSSSDFTSDS  720
EDLAGVLKDS GSSGNEEGTT SVSLLRDSNG KRSKLGGNKE SLNNELLSIL EPGQDGAAPV  780
YGKRSIERLD YKKLYAETYG HIPSDSSDDE DWTESDGPIK SMKTTGEDFS VSPNGNASGT  840
RNRKNTENEM KNLKETEHIA KRRGYKTLNA KDTNISQEGS SAPGSSKRRR SSYKRLGEDV  900
TQGDGDGGAE KTLYKSFKEN QYPDRIKKEA LAKELGITFS QVSRWFENTR WNYNHSSSMG  960
ARMGTIASEK STCTPQSNHR SVRRVSTSNV TKNVESPKTG VDDRGCSGED VKDRELVITE  1020
ESSKSKHTTR TSRKRKRKGK LGHHASRADK KIQVIHGLVA TSPKVQETRT SGRTRWRSRN  1080
SAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429433RKRKK
2431437RKKQKNR
310321037RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486963.10.0homeobox protein HAT3.1
SwissprotQ049961e-134HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A2H5P8I20.0A0A2H5P8I2_CITUN; Uncharacterized protein
STRINGXP_006486963.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-120Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]