PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2446_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 635aa    MW: 69508.1 Da    PI: 7.3933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2446_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08519567348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
    Neem_2446_f_6 519 AWTLCEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 567
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.293512571IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-13514574IPR009057Homeodomain-like
SMARTSM007171.6E-7516569IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-15518577IPR009057Homeodomain-like
CDDcd116604.93E-19518568No hitNo description
PfamPF002496.5E-6519567IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
METLVGVEGN EEGKFKECGV EKSSSSFSSP KLGANPVVYK LVRVDGDGRL VPATDDELME  60
VGNLLADEKI EMHLVADTGQ SEGFNCNERS SSGMPQLESS EGLSQSENAE VDAGKSKTRR  120
EEILQKAKQE ESHLLACGSP DHSSAYVLVD GQCSDQHDIL PGIDEKLHSE IPLQENDLSS  180
APSLNKSPVR QSVDVGELHG EICLDNLSIK ELHETFKATF GRETTVKDKQ WLKRRIAMGL  240
TNSCDVSTSS FVIKDNKLVN SGKEGSCNNE TTTSIRDPTV GPANGCCKDS SVNHSSEMEN  300
QQFVSGQKPG LCSIAYDCGS EDLHKEQRSA KRVRKPTRRY IEELSEVESK EHSGKPIISV  360
KTSGLRQISP KSNARPVRID SSNRTVRLDS LGGAGVQVPY VSRVRRSRPR KNVMALMEFH  420
PHSIGVTTTV ANQALGVHSS QPNSESADIV LKARSAPEQI QQPLIVEIQK DKQFSAMVSI  480
EQGQNMGLEH IDQSVDTSDD NVAIVPTVKG GMRRKHHRAW TLCEVMKLVE GVSRYGAGRW  540
SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS LAQAPADKRM GSRKHASSVP IPAPILLRVR  600
ELAEMQSQAP PNLSSSKLAG SAGRNNVNET RSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404410RRSRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244672e-38AM424467.2 Vitis vinifera contig VV78X123394.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465933.10.0uncharacterized protein LOC102630482 isoform X1
RefseqXP_006465935.10.0uncharacterized protein LOC102630482 isoform X1
RefseqXP_024953425.10.0uncharacterized protein LOC102630482 isoform X1
RefseqXP_024953426.10.0uncharacterized protein LOC102630482 isoform X1
TrEMBLV4SLW70.0V4SLW7_9ROSI; Uncharacterized protein
STRINGXP_006465933.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-118TRF-like 6