PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24578_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 321aa    MW: 36918.6 Da    PI: 9.1813
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24578_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.7e-092402781854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gL+ +qV++WF N R +
  Neem_24578_f_1 240 MFQNflHPYPKDAEKHLLAVKSGLSRTQVSNWFINARVR 278
                     6887779******************************88 PP
2BELL88.85.6e-29112181272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rq++ +kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ +++t++Al++iS+ +r+L+++i++qi
  Neem_24578_f_1 112 RQAVAAKKTQLLTLLQAVDERYNQCLDEIHTVVSAFHAATELDP-QVHTRFALQTISFLYRNLRERISKQI 181
                     78899***************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-3030179IPR006563POX domain
PfamPF075261.1E-3037178IPR006563POX domain
PROSITE profilePS5007111.11219282IPR001356Homeobox domain
CDDcd000861.72E-9222283No hitNo description
SMARTSM003896.6E-6222286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-25222295IPR009057Homeodomain-like
SuperFamilySSF466891.03E-15223290IPR009057Homeodomain-like
PfamPF059203.2E-15239278IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
HCLNATGLWS EQASCNSKEL SLSFGCHGPA QFSQFMSGSK YLHAIQEILA QIASYSLENL  60
DDVSYLTGER TGENTSFSSS FIAGRGRASM NSHEFPNFDG SLEVQRNSSV RRQAVAAKKT  120
QLLTLLQAVD ERYNQCLDEI HTVVSAFHAA TELDPQVHTR FALQTISFLY RNLRERISKQ  180
ILAMGAHFDR ECSRGKETIF VDSFIEEQWA LQQLKRKEHQ VWRPQRGLPE KSVSVLRAWM  240
FQNFLHPYPK DAEKHLLAVK SGLSRTQVSN WFINARVRLW KPMIEEMYRE VNRRKARRNE  300
EGNDSSHSSQ ISINNQRFSM N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15228289566Homeobox protein Meis2
3k2a_B8e-15228289566Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385015.10.0homeobox protein ATH1
RefseqXP_015385016.10.0homeobox protein ATH1
RefseqXP_024952981.10.0homeobox protein ATH1
RefseqXP_024952982.10.0homeobox protein ATH1
SwissprotP487311e-114ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A067GMY90.0A0A067GMY9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PZ720.0A0A2H5PZ72_CITUN; Uncharacterized protein
STRINGXP_006475948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-116homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]