PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2460_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 220aa    MW: 25315.7 Da    PI: 10.0832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2460_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.6e-1731122187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    +W+++ + +L++a  ++  +l+rg+l++++W++v++++     ++++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++++a
  Neem_2460_f_3  31 CWSEEATSTLVDAWGRRYMELNRGNLRQKDWQDVADAVnalhaHSKKTHRTDVQCKNRIDTIKKKYKIEKARVASSNGTLTSSWPFFERMDA 122
                    7*****************************************999****************************999888899********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2729123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGDLTESLTP STATPTNTTP YSRPLPVRED CWSEEATSTL VDAWGRRYME LNRGNLRQKD  60
WQDVADAVNA LHAHSKKTHR TDVQCKNRID TIKKKYKIEK ARVASSNGTL TSSWPFFERM  120
DALIGNNVKP STNFSPKLSQ SPPVAVPLAY RKSVSAIERF GEVYERVEAE KLRQMVELEK  180
QRMQFASDLE MQRLRMFTEM QVQLERNKRN KRSGSNGERC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449505.19e-94trihelix transcription factor ASIL2
RefseqXP_006467646.19e-94trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A2P5QSH01e-107A0A2P5QSH0_GOSBA; Uncharacterized protein
STRINGcassava4.1_013095m3e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-50sequence-specific DNA binding transcription factors