PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24648_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 149aa MW: 16354.5 Da PI: 6.2298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24648_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	93	110	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +Ka++L +++eY+k+Lq Neem_24648_f_1 93 TDKASMLDEVIEYLKQLQ 110 79***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.4E-7	84	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-7	90	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.76E-4	93	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
SKEEELLLTG KRARSARVPA APEWSSRDQS VSGSATFGRE SQHVTHDTHD MEMGVGFTST 60 SMGSPENTSS SKQGTKATTA DDHDSVCHGR PSTDKASMLD EVIEYLKQLQ AQVQMMSRMN 120 MPPHMMLPMT MQQQLQMSMM APMGMGMAI

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052181.2	1e-53	PREDICTED: transcription factor UNE10 isoform X2
Swissprot	Q8GZ38	9e-21	UNE10_ARATH; Transcription factor UNE10
TrEMBL	B9RD58	4e-56	B9RD58_RICCO; DNA binding protein, putative
STRING	XP_002511647.1	7e-57	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-12	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]