PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_24687_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 83aa MW: 9290.33 Da PI: 4.7472

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_24687_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.5	4.5e-13	49	74	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Neem_24687_f_1 49 DEADCIHYLRTGFCGYGSRCRFNHPR 74 6899********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-4	47	74	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.286	47	75	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-10	49	74	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-7	50	75	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-6	53	74	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MERYGRVSGG SQSDPSLEWT APGTETGLEE PMWQLGLGAG VESYPERPDE ADCIHYLRTG 60 FCGYGSRCRF NHPRDRGMMS IVF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826123.1	5e-40	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q9SQU4	2e-31	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	A0A2I4F3A9	1e-38	A0A2I4F3A9_JUGRE; zinc finger CCCH domain-containing protein 34-like
STRING	XP_007147888.1	1e-37	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25792	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	9e-34	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]