PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24714_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 181aa    MW: 19993.4 Da    PI: 8.6342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24714_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.32e-20127163237
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  Neem_24714_f_1 127 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQ 163
                     7***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-21111164IPR003657WRKY domain
SuperFamilySSF1182906.28E-18119164IPR003657WRKY domain
PROSITE profilePS5081120.013121181IPR003657WRKY domain
SMARTSM007746.3E-17126175IPR003657WRKY domain
PfamPF031063.8E-17128163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAPEQKVELN GMSSSLMSAQ QFMDPRPSAA LNVNDPSVSD DKTAREVSAS PANTAEVISK  60
EHEHPMIKIP GKQAFNNEDG GDQTSQSWGS PRSPNLDQTK NEEQASEAPF RKARVSVRAR  120
SEAPLITDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQKLDDNDH TMPPLTKFSI  180
K
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7090048e-43JF709004.2 Dimocarpus longan WRKY transcription factor 47-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444621.18e-85probable WRKY transcription factor 47 isoform X1
RefseqXP_006492427.18e-85probable WRKY transcription factor 47 isoform X1
RefseqXP_006492428.17e-85probable WRKY transcription factor 47 isoform X2
RefseqXP_024044530.17e-85probable WRKY transcription factor 47 isoform X2
TrEMBLA0A067H4522e-83A0A067H452_CITSI; Uncharacterized protein
TrEMBLA0A2H5NXV62e-83A0A2H5NXV6_CITUN; Uncharacterized protein
TrEMBLV4U6R22e-83V4U6R2_9ROSI; Uncharacterized protein
STRINGXP_006492427.13e-84(Citrus sinensis)
STRINGXP_006444621.13e-84(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.15e-37WRKY family protein