PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24780_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 670aa    MW: 73790.9 Da    PI: 8.401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24780_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10273321355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Neem_24780_f_1 273 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 321
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-10268325No hitNo description
SuperFamilySSF474591.3E-16268337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16270338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.40.101.2E-16619666IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136391.9E-13621663IPR001841Zinc finger, RING-type
CDDcd001621.70E-11621666No hitNo description
SuperFamilySSF578507.28E-20621668No hitNo description
SMARTSM001846.4E-8622662IPR001841Zinc finger, RING-type
PROSITE profilePS5008913.109622663IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGGGDNDDMG FQRRNESVMN CPSSGMNTNP LPQKVSGMTM NWVSMFKSPS GADHFFGSGW  60
DPIVSLSHGE NFGVSSMVSH NEFATSSYPV AMENQGISST SNLVQYSSDP SFVELVPKIP  120
CFGRSNLSEM VSSFGPRENS QIANSGCPLN YVPNEGGNGR TSTNVSQSYE DRQISEDAAI  180
GVSTNGKTRK RAPESNSHFN PDKNAEAELQ KDPSGDSSGV LKEQDDKKQK IEQNTGANLR  240
GEQAGKQAKD SSNSGEAPKE YIHVRAKRGQ ATNSHSLAER VRREKISERM RLLQELVPGC  300
NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNI DIERILSKDI LHSRSSSAAL  360
LGYSSGMTSS QPYPPGLFHG TIPSIPSANP QFPPLPQIRA KFLPNALAFV ACCSKMSTTC  420
ELKLQQDCTI INKVRNLNWD FRNMRPGFVI QLRVRHAVQD RNTPGLRATN TKPDRFFYVE  480
QDLFLSYHGM MGCLSNILAN EGITVDADGR FLCRNLVRLL LPNVFSQSVP ICSLQRVVEL  540
VLDHARYANL RQCNRFRKLV PLAMDLTLVR NQPFQFQLQL VDEAVILGGE SSGAIAIKSK  600
TVVAPVKLVE GLIQASCTEK DCSICLENFS VGQLASRTPC SHIFHKKCIA RWIIKSQSCP  660
LCRADLSKPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472332.10.0transcription factor bHLH74 isoform X1
RefseqXP_024039087.10.0transcription factor bHLH74 isoform X2
TrEMBLA0A067GP740.0A0A067GP74_CITSI; Uncharacterized protein
STRINGXP_006472332.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-67bHLH family protein