PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2493_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 230aa MW: 25953.3 Da PI: 9.5215

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2493_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ Neem_2493_f_1 15 LPPGFRFHPTDEELVVHYLKKKTTSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISSe 109 79**************************.88***********988899**********************************9986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Neem_2493_f_1 110 SNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 7788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-66	7	177	IPR003441	NAC domain
PROSITE profile	PS51005	62.069	15	176	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MESTDSSTGS PQPNLPPGFR FHPTDEELVV HYLKKKTTSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVISSES NQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLADNKVSNK PPGYDLGNKK NSLRLDDWVL CRIYKKNNTH 180 RPMDHDKEDA LDDMLGHIPS SLMVSSQQNT KLNLPTRSAN YGALIDNETN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-75	1	179	9	171	NAC domain-containing protein 19
3swm_B	8e-75	1	179	9	171	NAC domain-containing protein 19
3swm_C	8e-75	1	179	9	171	NAC domain-containing protein 19
3swm_D	8e-75	1	179	9	171	NAC domain-containing protein 19
3swp_A	8e-75	1	179	9	171	NAC domain-containing protein 19
3swp_B	8e-75	1	179	9	171	NAC domain-containing protein 19
3swp_C	8e-75	1	179	9	171	NAC domain-containing protein 19
3swp_D	8e-75	1	179	9	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606877.1	1e-147	NAC transcription factor 56
Swissprot	Q9LD44	1e-111	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0M5JAD3	1e-146	A0A0M5JAD3_MANES; NAC transcription factors 48
STRING	cassava4.1_022751m	1e-147	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-113	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]