PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2507_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 223aa    MW: 25533.6 Da    PI: 10.2281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2507_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.91.7e-22551781128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    +p+G+rF+P+d+ l  +yL+ kv g++  +++  ikevd++++   d+      ++ ++yfF++++++    + + r +  g+Wk+tg++  v++k
  Neem_2507_f_1  55 VPVGIRFKPNDQVLAGYYLAGKVYGRTdGPIFPLIKEVDVHQCLTYDF------GDGKMYFFTHSSTRR---NAELRHVPGGFWKKTGTTSFVKEK 141
                    599**********************996667778********988888......57799****998865...46788899*************999 PP

            NAM  96 ..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                      +++ + +  tLv+yk+  +++ ++kt+W+m+ey l
  Neem_2507_f_1 142 dhGKKPIATTLTLVYYKQdqKSKPAVKTQWLMNEYML 178
                    777788**********6522555678*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-2552205IPR003441NAC domain
PROSITE profilePS5100527.35655206IPR003441NAC domain
PfamPF023656.5E-1656177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MCRQRRLLKP PIFIFMAAPA TTIIESDQAN KHVPPTPMIS RSVLADDSKI WREKVPVGIR  60
FKPNDQVLAG YYLAGKVYGR TDGPIFPLIK EVDVHQCLTY DFGDGKMYFF THSSTRRNAE  120
LRHVPGGFWK KTGTTSFVKE KDHGKKPIAT TLTLVYYKQD QKSKPAVKTQ WLMNEYMLLD  180
SVQSPKQNDK QSKMLPPWTI CVVYSSNQQP DTKKAVAETQ HRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-125520915171Stress-induced transcription factor NAC1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-16NAC domain containing protein 47