PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25112_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 251aa MW: 29444.6 Da PI: 7.6157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25112_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.1e-11	195	231	1	40
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 +r++h ++Er+RR+++N+ +++Lr+l+P++ + ++++ Neem_25112_f_1 195 QRMTHIAVERNRRRQMNDHLNTLRSLMPSS---YVQRVNI 231 79***************************8...6666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.33E-9	188	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-8	193	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-7	193	235	No hit	No description
PROSITE profile	PS50888	10.404	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	195	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEKLQGPINP CFLGEHLSAD CLGQEFINTD ALRFEEEGPQ FTTQNLEERM PFLEMLQTVE 60 TPSLFPFKEP NFQTLLRLQH LKKPWEMANL YMPEMETQIQ ALELESCVTQ EILDLHSPVK 120 SETKDLQNPH STSCLEGLSS ESNQDQLNSV EKITHPQTRA RAKQTHFSKS PAINRERRKR 180 KRTKPIKNKE EVENQRMTHI AVERNRRRQM NDHLNTLRSL MPSSYVQRVN ISITLPIFNM 240 ITRVSFFNYY I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	RRKRKR
2	177	184	RKRKRTKP
3	195	206	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444719.1	1e-111	transcription factor bHLH57
Refseq	XP_006491385.1	1e-111	transcription factor bHLH57 isoform X2
TrEMBL	V4TCA2	1e-115	V4TCA2_9ROSI; Uncharacterized protein
STRING	XP_006491385.1	1e-110	(Citrus sinensis)
STRING	XP_006444719.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-37	bHLH family protein