PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25243_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 173aa MW: 20328.4 Da PI: 7.6058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25243_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	144.6	9.7e-45	2	168	208	374
GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 +++ +l+d++v ++s+rd+vL+l+k+++P+++++ + hn++ Fl rf eal ++s++fd++e+++pre++ ri+ Ere+ g++++nv+aceg Neem_25243_f_5 2 YRMRNLPDDTVVINSPRDAVLELIKKINPDIFILGVVNGTHNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRIVFEREIYGKDAMNVIACEG 96 68999**************************************************************************************** PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+er et+++W++r +aGF++++l++++ k++ +l++ + ++e +++++gWk+r +++S+W+ Neem_25243_f_5 97 MERVERPETYKQWQARNLRAGFRQLQLDKDILKNVMTLVKSNFHPDFVIDEVGQWMLQGWKGRLAYALSVWK 168 ***********************************9998888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.839	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-42	2	168	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MYRMRNLPDD TVVINSPRDA VLELIKKINP DIFILGVVNG THNAPFFLPR FREALFHFST 60 FFDMFESTVP REDQGRIVFE REIYGKDAMN VIACEGMERV ERPETYKQWQ ARNLRAGFRQ 120 LQLDKDILKN VMTLVKSNFH PDFVIDEVGQ WMLQGWKGRL AYALSVWKPI QDS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488350.1	1e-113	scarecrow-like protein 30 isoform X1
Refseq	XP_024034701.1	1e-113	scarecrow-like protein 30
Refseq	XP_024957826.1	1e-115	scarecrow-like protein 14 isoform X2
Swissprot	Q9XE58	2e-70	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A067FZQ4	1e-112	A0A067FZQ4_CITSI; Uncharacterized protein
STRING	XP_006488350.1	1e-112	(Citrus sinensis)
STRING	XP_006424858.1	1e-112	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	9e-73	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]