PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25391_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 70aa    MW: 8152.16 Da    PI: 5.6782
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25391_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.61.6e-271068260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Fl+k+y++++d++++++isw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+Y
  Neem_25391_f_1 10 FLMKTYQLVDDPNTDDVISWNESGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTY 68
                    9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-28368IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-20670IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.84E-24768IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-221068IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-176170IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MTQRTVPAPF LMKTYQLVDD PNTDDVISWN ESGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-196682687Heat shock factor protein 1
5d5v_B2e-196682687Heat shock factor protein 1
5d5v_D2e-196682687Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021656118.15e-42heat shock factor protein HSF24
SwissprotP223358e-39HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2H5PJX44e-40A0A2H5PJX4_CITUN; Uncharacterized protein
STRINGXP_006466606.17e-41(Citrus sinensis)
STRINGXP_006425895.11e-40(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-39heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]