PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25573_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 89aa    MW: 10096.3 Da    PI: 6.52
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25573_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-09651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ +
   Neem_25573_f_1  6 TWTAKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYEM 51
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.432257IPR017884SANT domain
SMARTSM007171.3E-7355IPR001005SANT/Myb domain
PfamPF002493.6E-6652IPR001005SANT/Myb domain
CDDcd001674.97E-7653No hitNo description
Gene3DG3DSA:1.10.10.605.2E-5659IPR009057Homeodomain-like
SuperFamilySSF466897.8E-13760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASNSTWTAK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKRHYE MLVEDVSKIE  60
AGEIPLPNYK KIGDSNNKGY SSYMEANNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-31273677RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102066.12e-48protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLW9RQB45e-47W9RQB4_9ROSA; DnaJ homolog subfamily C member 2
STRINGXP_010102066.19e-48(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-38RAD-like 6